Index

_

_alignment_handler (pyeeg.features.FeaturePipeline attribute) _components (pyeeg.features.FeatureReducer attribute) _explained_variance (pyeeg.features.FeatureReducer attribute) _extractors (pyeeg.features.FeaturePipeline attribute)

_fitted (pyeeg.features.FeatureReducer attribute) _is_1d() (in module pyeeg.utils) _mean (pyeeg.features.FeatureReducer attribute) _n_components (pyeeg.features.FeatureReducer attribute)

A

add_feature() (pyeeg.io.AlignedSpeech method) add_word_level_features() (pyeeg.io.AlignedSpeech method) align_word_features() (pyeeg.features.AlignmentHandler method) (pyeeg.io.WordLevelFeatures method)

AlignedSpeech (class in pyeeg.io) alignment_config (pyeeg.features.pipeline.PipelineConfig attribute) AlignmentHandler (class in pyeeg.features) apply_filterbank() (in module pyeeg.preprocess) apply_func() (pyeeg.models.TRFEstimator method)

B

block_conjugate_gradient() (in module pyeeg.solvers)

C

cache_features (pyeeg.features.pipeline.PipelineConfig attribute) canonical_correlate_single() (pyeeg.mcca.mCCA method), [1] CCA_Estimator (class in pyeeg.cca) chunk_data() (in module pyeeg.utils) clear_cache() (pyeeg.models.TRFEstimator method) closing_single_tree() (pyeeg.features.SyntacticFeatureExtractor method) coef_ (pyeeg.cca.CCA_Estimator attribute) (pyeeg.models.TRFEstimator attribute) colormap_masked() (in module pyeeg.vizu) compute_rotation() (pyeeg.preprocess.Whitener method) config (pyeeg.features.FeaturePipeline attribute) (pyeeg.features.FeatureReducer attribute) (pyeeg.features.pipeline.FeatureSpec attribute)

conjugate_gradient() (in module pyeeg.solvers) ConjugateGradientSolver (class in pyeeg.solvers) contains() (pyeeg.features.alignment.Interval method) copy() (pyeeg.models.TRFEstimator method) cov() (pyeeg.preprocess.Whitener method) covariance() (in module pyeeg.preprocess) covariances() (in module pyeeg.preprocess) covariances_extended() (in module pyeeg.preprocess) create_filterbank() (in module pyeeg.preprocess) create_laplacian_matrix() (in module pyeeg.solvers) create_quadratic_regularizer() (in module pyeeg.solvers) create_word_level_features() (pyeeg.io.AlignedSpeech method) csd_ndarray() (in module pyeeg.connectivity) CTRNN (class in pyeeg.simulate)

D

demean() (pyeeg.preprocess.Whitener method) denoise() (pyeeg.mcca.mCCA method), [1] depth_single_tree() (pyeeg.features.SyntacticFeatureExtractor method) diagonal_preconditioner() (in module pyeeg.solvers)

diffusive_coupling() (in module pyeeg.simulate) dummy_trf_kernel() (in module pyeeg.simulate) duration (pyeeg.io.AlignedSpeech attribute) (pyeeg.io.WordLevelFeatures attribute) duration() (pyeeg.features.alignment.Interval method)

E

eeglab2mne() (in module pyeeg.io) extract() (pyeeg.features.FeaturePipeline method) (pyeeg.features.SyntacticFeatureExtractor method) extract_audio() (pyeeg.features.FeaturePipeline method) extract_duration_audio() (in module pyeeg.io)

extract_duration_praat() (in module pyeeg.io) extract_from_tree() (pyeeg.features.SyntacticFeatureExtractor method) extract_to_array() (pyeeg.features.SyntacticFeatureExtractor method) extract_to_dict() (pyeeg.features.SyntacticFeatureExtractor method) extractor_type (pyeeg.features.pipeline.FeatureSpec attribute)

F

feat_names_ (pyeeg.cca.CCA_Estimator attribute) (pyeeg.models.TRFEstimator attribute) feats (pyeeg.io.AlignedSpeech attribute) feature_alphas (pyeeg.models.TRFEstimator attribute) feature_specs (pyeeg.features.pipeline.PipelineConfig attribute) FeaturePipeline (class in pyeeg.features) FeatureReducer (class in pyeeg.features) features (pyeeg.features.pipeline.FeatureSpec attribute) FeatureSpec (class in pyeeg.features.pipeline) fieldtrip2mne() (in module pyeeg.io) fill_lags() (pyeeg.models.TRFEstimator method) find_knee_point() (in module pyeeg.utils) fir_order() (in module pyeeg.utils) fit() (pyeeg.cca.CCA_Estimator method) (pyeeg.features.FeatureReducer method) (pyeeg.mcca.mCCA method), [1] (pyeeg.models.TRFEstimator method) (pyeeg.preprocess.MultichanWienerFilter method) (pyeeg.preprocess.Whitener method)

fit_ar() (in module pyeeg.models) fit_intercept (pyeeg.cca.CCA_Estimator attribute) (pyeeg.models.TRFEstimator attribute) fit_transform() (pyeeg.features.FeatureReducer method) (pyeeg.preprocess.MultichanWienerFilter method) (pyeeg.preprocess.Whitener method) fit_var() (in module pyeeg.models) fitted (pyeeg.models.TRFEstimator attribute) fromArray() (pyeeg.models.TRFEstimator method)

G

get_alpinopy_tree() (pyeeg.features.SyntacticFeatureExtractor method) get_components() (pyeeg.features.FeatureReducer method) get_envelope() (pyeeg.io.AlignedSpeech method) get_explained_variance() (pyeeg.features.FeatureReducer method) get_metadata_routing() (pyeeg.cca.CCA_Estimator method) (pyeeg.mcca.mCCA method) (pyeeg.models.TRFEstimator method) (pyeeg.preprocess.MultichanWienerFilter method) get_n_components() (pyeeg.features.FeatureReducer method) get_params() (pyeeg.cca.CCA_Estimator method) (pyeeg.mcca.mCCA method) (pyeeg.models.TRFEstimator method) (pyeeg.preprocess.MultichanWienerFilter method)

get_phone_intervals() (pyeeg.features.alignment.TextGrid method) get_power() (in module pyeeg.preprocess) get_sentence_position() (in module pyeeg.io) get_spatial_colors() (in module pyeeg.vizu) get_stanford_tree() (pyeeg.features.SyntacticFeatureExtractor method) get_tier() (pyeeg.features.alignment.TextGrid method) get_word_intervals() (pyeeg.features.alignment.TextGrid method) get_word_onsets() (in module pyeeg.io) get_word_vectors() (in module pyeeg.io) granger_causality() (in module pyeeg.connectivity)

H

HopfOscillator (class in pyeeg.simulate)

I

incomplete_cholesky_preconditioner() (in module pyeeg.solvers) indices (pyeeg.io.AlignedSpeech attribute) individual_transforms_ (pyeeg.mcca.mCCA attribute) intercept_ (pyeeg.cca.CCA_Estimator attribute) (pyeeg.models.TRFEstimator attribute)

Interval (class in pyeeg.features.alignment) inverse() (pyeeg.preprocess.Whitener method) inverse_transform() (pyeeg.features.FeatureReducer method) IRLSSolver (class in pyeeg.solvers) is_pos_def() (in module pyeeg.utils)

J

jackknife_resample() (in module pyeeg.connectivity) JansenRit (class in pyeeg.simulate)

JansenRitExtended (class in pyeeg.simulate) JRNetwork (class in pyeeg.simulate)

K

Kuramoto (class in pyeeg.simulate)

kuramoto_coupling() (in module pyeeg.simulate)

L

lag_matrix() (in module pyeeg.utils) lag_span() (in module pyeeg.utils) lag_sparse() (in module pyeeg.utils) lags (pyeeg.models.TRFEstimator attribute) (pyeeg.preprocess.MultichanWienerFilter attribute) linear_coupling() (in module pyeeg.simulate) load() (pyeeg.models.TRFEstimator method) load_close_values() (in module pyeeg.io)

load_depth_values() (in module pyeeg.io) load_ica_matrices() (in module pyeeg.io) load_mat() (in module pyeeg.io) load_open_values() (in module pyeeg.io) load_surprisal_values() (in module pyeeg.io) load_textgrid_from_string() (pyeeg.features.AlignmentHandler method) load_wordfreq_values() (in module pyeeg.io) low_rank (pyeeg.preprocess.MultichanWienerFilter attribute) LSTSQSolver (class in pyeeg.solvers)

M

mCCA (class in pyeeg.mcca) mem_check() (in module pyeeg.utils) method (pyeeg.features.reduction.ReductionConfig attribute) module pyeeg.connectivity pyeeg.features pyeeg.io pyeeg.mcca pyeeg.models pyeeg.preprocess pyeeg.simulate pyeeg.solvers pyeeg.stats pyeeg.utils pyeeg.vizu

moving_average() (in module pyeeg.utils) mu (pyeeg.preprocess.Whitener attribute) multialpha_score() (pyeeg.models.TRFEstimator method) MultichanWienerFilter (class in pyeeg.preprocess)

N

n_chans_ (pyeeg.cca.CCA_Estimator attribute) (pyeeg.models.TRFEstimator attribute) n_components (pyeeg.features.reduction.ReductionConfig attribute) n_datasets_ (pyeeg.mcca.mCCA attribute) n_feats_ (pyeeg.cca.CCA_Estimator attribute) (pyeeg.models.TRFEstimator attribute)

name (pyeeg.features.pipeline.FeatureSpec attribute) NeuralMassNetwork (class in pyeeg.simulate) NeuralMassNode (class in pyeeg.simulate) normalization (pyeeg.features.pipeline.PipelineConfig attribute) normalize_features() (pyeeg.features.FeaturePipeline method)

O

onset_list (pyeeg.io.AlignedSpeech attribute)

opening_single_tree() (pyeeg.features.SyntacticFeatureExtractor method)

P

pairwise_boxplots() (in module pyeeg.vizu) parse_from_string() (pyeeg.features.TextGridParser method) parse_text() (pyeeg.features.SyntacticFeatureExtractor method) ParserConfig (class in pyeeg.features.syntactic_features) phase_transfer_entropy() (in module pyeeg.connectivity) Phasor (class in pyeeg.simulate) PipelineConfig (class in pyeeg.features.pipeline) plm() (in module pyeeg.connectivity) plot() (pyeeg.models.TRFEstimator method) plot_activation_map() (pyeeg.cca.CCA_Estimator method) plot_all_dim_time() (pyeeg.cca.CCA_Estimator method) plot_compact_time() (pyeeg.cca.CCA_Estimator method) plot_corr() (pyeeg.cca.CCA_Estimator method) plot_filterbank() (in module pyeeg.vizu) plot_filterbank_output() (in module pyeeg.vizu) plot_interactive() (in module pyeeg.vizu) plot_multialpha_scores() (pyeeg.models.TRFEstimator method) plot_spatial_filter() (pyeeg.cca.CCA_Estimator method) plot_summary_components_variance() (pyeeg.mcca.mCCA method) plot_time_filter() (pyeeg.cca.CCA_Estimator method) plot_topomap() (pyeeg.models.TRFEstimator method) plot_trf_signi() (in module pyeeg.vizu) plots_topogrid() (in module pyeeg.vizu)

predict() (pyeeg.models.TRFEstimator method) pvals_ (pyeeg.models.TRFEstimator attribute) pyeeg.connectivity module pyeeg.features module pyeeg.io module pyeeg.mcca module pyeeg.models module pyeeg.preprocess module pyeeg.simulate module pyeeg.solvers module pyeeg.stats module pyeeg.utils module pyeeg.vizu module

R

random_state (pyeeg.features.reduction.ReductionConfig attribute) read_out() (pyeeg.simulate.CTRNN method) (pyeeg.simulate.HopfOscillator method) (pyeeg.simulate.JansenRit method) (pyeeg.simulate.JansenRitExtended method) (pyeeg.simulate.Phasor method) (pyeeg.simulate.WilsonCowan method)

ReductionConfig (class in pyeeg.features.reduction) reset() (pyeeg.simulate.CTRNN method) (pyeeg.simulate.JRNetwork method) (pyeeg.simulate.Kuramoto method) (pyeeg.simulate.NeuralMassNetwork method) rolling_func() (in module pyeeg.utils)

S

samples_from_onset() (pyeeg.io.AlignedSpeech method) save() (pyeeg.models.TRFEstimator method) SC_variances (pyeeg.mcca.mCCA attribute) scale (pyeeg.preprocess.Whitener attribute) ScipyRobustSolver (class in pyeeg.solvers) score() (pyeeg.models.TRFEstimator method) SCs_ (pyeeg.mcca.mCCA attribute) select_best_coefs() (pyeeg.models.TRFEstimator method) set_fit_request() (pyeeg.cca.CCA_Estimator method) (pyeeg.models.TRFEstimator method) (pyeeg.preprocess.MultichanWienerFilter method) set_output() (pyeeg.preprocess.MultichanWienerFilter method) (pyeeg.preprocess.Whitener method) set_params() (pyeeg.cca.CCA_Estimator method) (pyeeg.mcca.mCCA method) (pyeeg.models.TRFEstimator method) (pyeeg.preprocess.MultichanWienerFilter method) set_score_request() (pyeeg.models.TRFEstimator method) set_transform_request() (pyeeg.cca.CCA_Estimator method) shift_array() (in module pyeeg.utils) sigma (pyeeg.preprocess.Whitener attribute) signal_envelope() (in module pyeeg.utils) significance_overlay() (in module pyeeg.vizu) simulate() (pyeeg.simulate.CTRNN method) (pyeeg.simulate.HopfOscillator method) (pyeeg.simulate.JansenRit method) (pyeeg.simulate.JansenRitExtended method) (pyeeg.simulate.JRNetwork method) (pyeeg.simulate.Kuramoto method) (pyeeg.simulate.NeuralMassNetwork method) (pyeeg.simulate.NeuralMassNode method) (pyeeg.simulate.Phasor method) (pyeeg.simulate.WilsonCowan method)

simulate_ar() (in module pyeeg.simulate) simulate_pulse_inputs() (in module pyeeg.simulate) simulate_smooth_input() (in module pyeeg.simulate) simulate_trf_output() (in module pyeeg.simulate) simulate_var() (in module pyeeg.simulate) simulate_var_from_cov() (in module pyeeg.simulate) solve() (pyeeg.solvers.ConjugateGradientSolver method) (pyeeg.solvers.IRLSSolver method) (pyeeg.solvers.LSTSQSolver method) (pyeeg.solvers.ScipyRobustSolver method) (pyeeg.solvers.Solver method) (pyeeg.solvers.SVDSolver method) Solver (class in pyeeg.solvers) solver (pyeeg.models.TRFEstimator attribute) SolverResult (class in pyeeg.solvers) srate (pyeeg.cca.CCA_Estimator attribute) (pyeeg.io.AlignedSpeech attribute) (pyeeg.models.TRFEstimator attribute) step() (pyeeg.simulate.CTRNN method) (pyeeg.simulate.HopfOscillator method) (pyeeg.simulate.JansenRit method) (pyeeg.simulate.JansenRitExtended method) (pyeeg.simulate.JRNetwork method) (pyeeg.simulate.Kuramoto method) (pyeeg.simulate.NeuralMassNetwork method) (pyeeg.simulate.NeuralMassNode method) (pyeeg.simulate.Phasor method) (pyeeg.simulate.WilsonCowan method) summary() (pyeeg.io.WordLevelFeatures method) surprisal (pyeeg.io.WordLevelFeatures attribute) svd_solver() (in module pyeeg.solvers) SVDSolver (class in pyeeg.solvers) SyntacticFeatureExtractor (class in pyeeg.features)

T

TextGrid (class in pyeeg.features.alignment) TextGridParser (class in pyeeg.features) thresh (pyeeg.preprocess.MultichanWienerFilter attribute) times (pyeeg.cca.CCA_Estimator attribute) (pyeeg.models.TRFEstimator attribute) topomap() (in module pyeeg.vizu)

topoplot_array() (in module pyeeg.vizu) transform() (pyeeg.cca.CCA_Estimator method) (pyeeg.features.FeatureReducer method) (pyeeg.preprocess.Whitener method) transorm() (pyeeg.preprocess.MultichanWienerFilter method) TRFEstimator (class in pyeeg.models) tvals_ (pyeeg.models.TRFEstimator attribute)

U

U (pyeeg.preprocess.Whitener attribute)

update_connectivity() (pyeeg.simulate.JRNetwork method) use_regularisation (pyeeg.models.TRFEstimator attribute)

V

variance_threshold (pyeeg.features.reduction.ReductionConfig attribute)

vectordim (pyeeg.io.WordLevelFeatures attribute)

W

W (pyeeg.preprocess.Whitener attribute) W_ (pyeeg.preprocess.MultichanWienerFilter attribute) WaveletTransform (in module pyeeg.preprocess) whiten (pyeeg.features.reduction.ReductionConfig attribute) Whitener (class in pyeeg.preprocess) WilsonCowan (class in pyeeg.simulate) wordfrequency (pyeeg.io.WordLevelFeatures attribute)

WordLevelFeatures (class in pyeeg.io) wordlist (pyeeg.io.WordLevelFeatures attribute) wordonsets (pyeeg.io.WordLevelFeatures attribute) wordvectors (pyeeg.io.WordLevelFeatures attribute) wordvectors_matrix (pyeeg.io.WordLevelFeatures attribute) wordvectors_vocab (pyeeg.io.WordLevelFeatures attribute) wPLI() (in module pyeeg.connectivity)

X

xfit() (pyeeg.models.TRFEstimator method)

xlags (pyeeg.cca.CCA_Estimator attribute)